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1.
Nature ; 615(7950): 80-86, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36859581

RESUMO

The distribution of dryland trees and their density, cover, size, mass and carbon content are not well known at sub-continental to continental scales1-14. This information is important for ecological protection, carbon accounting, climate mitigation and restoration efforts of dryland ecosystems15-18. We assessed more than 9.9 billion trees derived from more than 300,000 satellite images, covering semi-arid sub-Saharan Africa north of the Equator. We attributed wood, foliage and root carbon to every tree in the 0-1,000 mm year-1 rainfall zone by coupling field data19, machine learning20-22, satellite data and high-performance computing. Average carbon stocks of individual trees ranged from 0.54 Mg C ha-1 and 63 kg C tree-1 in the arid zone to 3.7 Mg C ha-1 and 98 kg tree-1 in the sub-humid zone. Overall, we estimated the total carbon for our study area to be 0.84 (±19.8%) Pg C. Comparisons with 14 previous TRENDY numerical simulation studies23 for our area found that the density and carbon stocks of scattered trees have been underestimated by three models and overestimated by 11 models, respectively. This benchmarking can help understand the carbon cycle and address concerns about land degradation24-29. We make available a linked database of wood mass, foliage mass, root mass and carbon stock of each tree for scientists, policymakers, dryland-restoration practitioners and farmers, who can use it to estimate farmland tree carbon stocks from tablets or laptops.


Assuntos
Carbono , Clima Desértico , Ecossistema , Árvores , Carbono/análise , Carbono/metabolismo , Árvores/anatomia & histologia , Árvores/química , Árvores/metabolismo , Dessecação , Imagens de Satélites , África Subsaariana , Aprendizado de Máquina , Madeira/análise , Raízes de Plantas , Agricultura , Recuperação e Remediação Ambiental , Bases de Dados Factuais , Biomassa , Computadores
2.
PLoS One ; 16(3): e0248462, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33684149

RESUMO

[This corrects the article DOI: 10.1371/journal.pone.0233279.].

3.
Front Vet Sci ; 8: 730424, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-35187137

RESUMO

Rift Valley fever virus (RVFV) activity in Southern Africa tends to occur during periods of sustained elevated rainfall, cooler than normal conditions, and abundant vegetation cover creating ideal conditions for the increase and propagation of populations of RVFV mosquito vectors. These climatic and ecological conditions are modulated by large-scale tropical-wide El Niño-Southern Oscillation (ENSO) phenomena. The aim of this 5-year study was to investigate climatic conditions during Rift Valley fever "post-epizootic" period in Free State province of the Republic of South Africa, which historically experienced the largest RVF outbreaks in this country. We collected satellite-derived rainfall, land surface temperature (LST), and normalized difference vegetation index (NDVI) data since 2014 to understand broad environmental conditions in the years following a period of sustained and widespread large RVF outbreaks (2008-2011) in the region. We found this post-epizootic/interepizootic period to be characterized by below-normal rainfall (~-500 mm), above LSTs (~+12°C), depressed NDVI (60% below normal), and severe drought as manifested particularly during the 2015-2016 growing season. Such conditions reduce the patchwork of appropriate habitats available for emergence of RVFV vectors and diminish chances of RVFV activity. However, the 2016-2017 growing season saw a marked return to somewhat wetter conditions without any reported RVFV transmission. In general, the aggregate vector collections during this 5-year period follow patterns observed in climate measurements. During the 2017-2018 growing season, late and seasonally above average rainfall resulted in a focal RVF outbreak in one location in the study region. This unanticipated event is an indicator of cryptic RVF activity during post-epizootic period and may be a harbinger of RVFV activity in the coming years.

4.
PLoS One ; 15(12): e0233279, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33315866

RESUMO

The first documented Rift Valley hemorrhagic fever outbreak in the Arabian Peninsula occurred in northwestern Yemen and southwestern Saudi Arabia from August 2000 to September 2001. This Rift Valley fever outbreak is unique because the virus was introduced into Arabia during or after the 1997-1998 East African outbreak and before August 2000, either by wind-blown infected mosquitos or by infected animals, both from East Africa. A wet period from August 2000 into 2001 resulted in a large number of amplification vector mosquitoes, these mosquitos fed on infected animals, and the outbreak occurred. More than 1,500 people were diagnosed with the disease, at least 215 died, and widespread losses of domestic animals were reported. Using a combination of satellite data products, including 2 x 2 m digital elevation images derived from commercial satellite data, we show rainfall and potential areas of inundation or water impoundment were favorable for the 2000 outbreak. However, favorable conditions for subsequent outbreaks were present in 2007 and 2013, and very favorable conditions were also present in 2016-2018. The lack of subsequent Rift Valley fever outbreaks in this area suggests that Rift Valley fever has not been established in mosquito species in Southwest Arabia, or that strict animal import inspection and quarantine procedures, medical and veterinary surveillance, and mosquito control efforts put in place in Saudi Arabia following the 2000 outbreak have been successful. Any area with Rift Valley fever amplification vector mosquitos present is a potential outbreak area unless strict animal import inspection and quarantine proceedures are in place.


Assuntos
Febre do Vale de Rift/epidemiologia , Febre do Vale de Rift/história , África Oriental/epidemiologia , Animais , Animais Domésticos , Arábia/epidemiologia , Surtos de Doenças , História do Século XXI , Humanos , Vírus da Febre do Vale do Rift/patogenicidade , Arábia Saudita/epidemiologia , Doenças Transmitidas por Vetores/epidemiologia , Iêmen/epidemiologia
5.
Sci Rep ; 10(1): 17737, 2020 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-33060691

RESUMO

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

6.
Nature ; 587(7832): 78-82, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-33057199

RESUMO

A large proportion of dryland trees and shrubs (hereafter referred to collectively as trees) grow in isolation, without canopy closure. These non-forest trees have a crucial role in biodiversity, and provide ecosystem services such as carbon storage, food resources and shelter for humans and animals1,2. However, most public interest relating to trees is devoted to forests, and trees outside of forests are not well-documented3. Here we map the crown size of each tree more than 3 m2 in size over a land area that spans 1.3 million km2 in the West African Sahara, Sahel and sub-humid zone, using submetre-resolution satellite imagery and deep learning4. We detected over 1.8 billion individual trees (13.4 trees per hectare), with a median crown size of 12 m2, along a rainfall gradient from 0 to 1,000 mm per year. The canopy cover increases from 0.1% (0.7 trees per hectare) in hyper-arid areas, through 1.6% (9.9 trees per hectare) in arid and 5.6% (30.1 trees per hectare) in semi-arid zones, to 13.3% (47 trees per hectare) in sub-humid areas. Although the overall canopy cover is low, the relatively high density of isolated trees challenges prevailing narratives about dryland desertification5-7, and even the desert shows a surprisingly high tree density. Our assessment suggests a way to monitor trees outside of forests globally, and to explore their role in mitigating degradation, climate change and poverty.


Assuntos
Clima Desértico , Ecossistema , Árvores , África Ocidental , Tamanho Corporal , Mudança Climática , Aprendizado Profundo , Mapeamento Geográfico , Chuva , Árvores/fisiologia
7.
Angew Chem Int Ed Engl ; 58(42): 15142-15147, 2019 10 14.
Artigo em Inglês | MEDLINE | ID: mdl-31400024

RESUMO

Synthetic anion transporters that facilitate transmembrane H+ /Cl- symport (cotransport) have anti-cancer potential due to their ability to neutralize pH gradients and inhibit autophagy in cells. However, compared to the natural product prodigiosin, synthetic anion transporters have low-to-modest H+ /Cl- symport activity and their mechanism of action remains less well understood. We report a chloride-selective tetraurea macrocycle that has a record-high H+ /Cl- symport activity similar to that of prodigiosin and most importantly demonstrates unprecedented voltage-switchable transport properties that are linked to the lack of uniport activity. By studying the anion binding affinity and transport mechanisms of four other anion transporters, we show that the lack of uniport and voltage-dependent H+ /Cl- symport originate from strong binding to phospholipid headgroups that hampers the diffusion of the free transporters through the membrane, leading to an unusual H+ /Cl- symport mechanism that involves only charged species. Our work provides important mechanistic insights into different classes of anion transporters and a new approach to achieve voltage-switchability in artificial membrane transport systems.


Assuntos
Cloretos/química , Fluorocarbonos/química , Hidrogênio/química , Lipídeos/química , Compostos Macrocíclicos/química , Animais , Membrana Celular/química , Transporte de Íons , Bicamadas Lipídicas/química , Potenciais da Membrana , Modelos Biológicos , Estrutura Molecular , Prodigiosina/química
8.
Sci Rep ; 9(1): 1930, 2019 02 13.
Artigo em Inglês | MEDLINE | ID: mdl-30760757

RESUMO

Interannual climate variability patterns associated with the El Niño-Southern Oscillation phenomenon result in climate and environmental anomaly conditions in specific regions worldwide that directly favor outbreaks and/or amplification of variety of diseases of public health concern including chikungunya, hantavirus, Rift Valley fever, cholera, plague, and Zika. We analyzed patterns of some disease outbreaks during the strong 2015-2016 El Niño event in relation to climate anomalies derived from satellite measurements. Disease outbreaks in multiple El Niño-connected regions worldwide (including Southeast Asia, Tanzania, western US, and Brazil) followed shifts in rainfall, temperature, and vegetation in which both drought and flooding occurred in excess (14-81% precipitation departures from normal). These shifts favored ecological conditions appropriate for pathogens and their vectors to emerge and propagate clusters of diseases activity in these regions. Our analysis indicates that intensity of disease activity in some ENSO-teleconnected regions were approximately 2.5-28% higher during years with El Niño events than those without. Plague in Colorado and New Mexico as well as cholera in Tanzania were significantly associated with above normal rainfall (p < 0.05); while dengue in Brazil and southeast Asia were significantly associated with above normal land surface temperature (p < 0.05). Routine and ongoing global satellite monitoring of key climate variable anomalies calibrated to specific regions could identify regions at risk for emergence and propagation of disease vectors. Such information can provide sufficient lead-time for outbreak prevention and potentially reduce the burden and spread of ecologically coupled diseases.


Assuntos
Doenças Transmissíveis/epidemiologia , Surtos de Doenças , El Niño Oscilação Sul , Modelos Biológicos , Humanos
9.
J Prof Nurs ; 33(2): 119-125, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28363386

RESUMO

Approximately 3 million nurses make up the U.S. health care workforce. The Robert Wood Johnson Foundation and the Institute of Medicine (2011) supported the call to strengthen the nursing profession by establishing global standards of educational criteria and outcomes. Throughout the world, health education is affected by fundamental inadequacies related to static, fragmented, and content-oriented curricula. There are inadequacies in our curricula, and nursing faculties are facing challenges with clinical placements (both the number and quality of these placements); therefore, alternative methods of providing practice to students need to be considered. A transformative agenda comprising changes in the way students are taught fully harnessing the potential of information and communications technology (i.e., simulation) is necessary. Simulated patient encounters and Objective Structured Clinical Examinations are 2 means to achieve needed practice in a safe environment. The purpose of this article is to show, by using simulation, how students can practice and be evaluated within their clinical practice role in a safe, controlled environment. In addition, this practice can (a) enable students to increase the complexity of their understanding and their autonomy and (b) educate students about social accountability, health and gender equity, social justice, and human rights.


Assuntos
Prática Avançada de Enfermagem , Competência Clínica/normas , Currículo/normas , Avaliação Educacional/métodos , Educação de Pós-Graduação em Enfermagem , Docentes de Enfermagem , Humanos , Pesquisa em Educação de Enfermagem , Treinamento por Simulação/métodos , Estudantes de Enfermagem
10.
PLoS Curr ; 72015 Jan 26.
Artigo em Inglês | MEDLINE | ID: mdl-25685635

RESUMO

BACKGROUND: The El Niño/Southern Oscillation (ENSO) is a global climate phenomenon that impacts human infectious disease risk worldwide through droughts, floods, and other climate extremes. Throughout summer and fall 2014 and winter 2015, El Niño Watch, issued by the US National Oceanic and Atmospheric Administration, assessed likely El Niño development during the Northern Hemisphere fall and winter, persisting into spring 2015. METHODS: We identified geographic regions where environmental conditions may increase infectious disease transmission if the predicted El Niño occurs using El Niño indicators (Sea Surface Temperature [SST], Outgoing Longwave Radiation [OLR], and rainfall anomalies) and literature review of El Niño-infectious disease associations. RESULTS: SSTs in the equatorial Pacific and western Indian Oceans were anomalously elevated during August-October 2014, consistent with a developing weak El Niño event. Teleconnections with local climate is evident in global precipitation patterns, with positive OLR anomalies (drier than average conditions) across Indonesia and coastal southeast Asia, and negative anomalies across northern China, the western Indian Ocean, central Asia, north-central and northeast Africa, Mexico/Central America, the southwestern United States, and the northeastern and southwestern tropical Pacific. Persistence of these conditions could produce environmental settings conducive to increased transmission of cholera, dengue, malaria, Rift Valley fever, and other infectious diseases in regional hotspots as during previous El Niño events. DISCUSSION AND CONCLUSIONS: The current development of weak El Niño conditions may have significant potential implications for global public health in winter 2014-spring 2015. Enhanced surveillance and other preparedness measures in predicted infectious disease hotspots could mitigate health impacts.

11.
ACS Chem Biol ; 10(2): 364-71, 2015 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-25457457

RESUMO

Mycobacterium tuberculosis (Mtb) maintains its intrabacterial pH (pHIB) near neutrality in the acidic environment of phagosomes within activated macrophages. A previously reported genetic screen revealed that Mtb loses this ability when the mycobacterial acid resistance protease (marP) gene is disrupted. In the present study, a high throughput screen (HTS) of compounds against the protease domain of MarP identified benzoxazinones as inhibitors of MarP. A potent benzoxazinone, BO43 (6-chloro-2-(2'-methylphenyl)-4H-1,3-benzoxazin-4-one), acylated MarP and lowered Mtb's pHIB and survival during incubation at pH 4.5. BO43 had similar effects on MarP-deficient Mtb, suggesting the existence of additional target(s). Reaction of an alkynyl-benzoxazinone, BO43T, with Mycobacterium bovis variant bacille Calmette-Guérin (BCG) followed by click chemistry with azido-biotin identified both the MarP homologue and the high temperature requirement A1 (HtrA1) homologue, an essential protein. Thus, the chemical probe identified through a target-based screen not only reacted with its intended target in the intact cells but also implicated an additional enzyme that had eluded a genetic screen biased against essential genes.


Assuntos
Homeostase , Mycobacterium tuberculosis/enzimologia , Mycobacterium tuberculosis/metabolismo , Periplasma/enzimologia , Serina Proteases/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Benzoxazinas/química , Benzoxazinas/farmacologia , Regulação Bacteriana da Expressão Gênica/fisiologia , Regulação Enzimológica da Expressão Gênica/fisiologia , Concentração de Íons de Hidrogênio , Sondas Moleculares/química , Sondas Moleculares/metabolismo , Estrutura Molecular , Mycobacterium tuberculosis/citologia , Mycobacterium tuberculosis/genética , Serina Proteases/genética , Inibidores de Serino Proteinase/química , Inibidores de Serino Proteinase/farmacologia
12.
Mil Med ; 179(7): 806-14, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25003869

RESUMO

Plasmodium vivax malaria reemerged in the Republic of Korea in 1993 after it had been declared malaria free in 1979. Malaria rapidly increased and peaked in 2000 with 4,142 cases with lower but variable numbers of cases reported through 2011. We examined the association of regional climate trends over the Korean Peninsula relative to malaria cases in U.S. military and Republic of Korea soldiers, veterans, and civilians from 1950 to 2011. Temperatures and anomaly trends in air temperature associated with satellite remotely sensed outgoing long-wave radiation were used to observe temporal changes. These changes, particularly increasing air temperatures, in combination with moderate rains throughout the malaria season, and distribution of malaria vectors, likely supported the 1993 reemergence and peaks in malaria incidence that occurred through 2011 by accelerating the rate of parasite development in mosquitoes and increased numbers as a result of an expansion of larval habitat, thereby increasing the vectorial capacity of Anopheles vectors. High malaria rates associated with a favorable climate were similarly observed during the Korean War. These findings support the need for increased investigations into malaria predictive models using climate-related variables.


Assuntos
Surtos de Doenças/história , Malária Vivax/história , Militares/história , Temperatura , História do Século XX , História do Século XXI , Humanos , Malária Vivax/epidemiologia , República da Coreia/epidemiologia , Estudos Retrospectivos , Estações do Ano
13.
PLoS One ; 9(3): e92538, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24658301

RESUMO

We document significant worldwide weather anomalies that affected agriculture and vector-borne disease outbreaks during the 2010-2012 period. We utilized 2000-2012 vegetation index and land surface temperature data from NASA's satellite-based Moderate Resolution Imaging Spectroradiometer (MODIS) to map the magnitude and extent of these anomalies for diverse regions including the continental United States, Russia, East Africa, Southern Africa, and Australia. We demonstrate that shifts in temperature and/or precipitation have significant impacts on vegetation patterns with attendant consequences for agriculture and public health. Weather extremes resulted in excessive rainfall and flooding as well as severe drought, which caused ∼10 to 80% variation in major agricultural commodity production (including wheat, corn, cotton, sorghum) and created exceptional conditions for extensive mosquito-borne disease outbreaks of dengue, Rift Valley fever, Murray Valley encephalitis, and West Nile virus disease. Analysis of MODIS data provided a standardized method for quantifying the extreme weather anomalies observed during this period. Assessments of land surface conditions from satellite-based systems such as MODIS can be a valuable tool in national, regional, and global weather impact determinations.


Assuntos
Agricultura , Surtos de Doenças/estatística & dados numéricos , Tempo (Meteorologia) , África Oriental , África Austral , Austrália , Clima , Dengue/epidemiologia , Secas , Vírus da Encefalite do Vale de Murray , Encefalite por Arbovirus/epidemiologia , Inundações , Saúde Pública , Febre do Vale de Rift/epidemiologia , Federação Russa , Astronave , Estados Unidos , Febre do Nilo Ocidental/epidemiologia
14.
mBio ; 4(5): e00475-13, 2013 Sep 17.
Artigo em Inglês | MEDLINE | ID: mdl-24045640

RESUMO

UNLABELLED: Mycobacterium tuberculosis depends on aerobic respiration for growth and utilizes an aa3-type cytochrome c oxidase for terminal electron transfer. Cytochrome c maturation in bacteria requires covalent attachment of heme to apocytochrome c, which occurs outside the cytoplasmic membrane. We demonstrate that in M. tuberculosis the thioredoxin-like protein Rv3673c, which we named CcsX, is required for heme insertion in cytochrome c. Inactivation of CcsX resulted in loss of c-type heme absorbance, impaired growth and virulence of M. tuberculosis, and induced cytochrome bd oxidase. This suggests that the bioenergetically less efficient bd oxidase can compensate for deficient cytochrome c oxidase activity, highlighting the flexibility of the M. tuberculosis respiratory chain. A spontaneous mutation in the active site of vitamin K epoxide reductase (VKOR) suppressed phenotypes of the CcsX mutant and abrogated the activity of the disulfide bond-dependent alkaline phosphatase, which shows that VKOR is the major disulfide bond catalyzing protein in the periplasm of M. tuberculosis. IMPORTANCE: Mycobacterium tuberculosis requires oxygen for growth; however, the biogenesis of respiratory chain components in mycobacteria has not been explored. Here, we identified a periplasmic thioredoxin, CcsX, necessary for heme insertion into cytochrome c. We investigated the consequences of disrupting cytochrome c maturation (CCM) for growth and survival of M. tuberculosis in vitro and for its pathogenesis. Appearance of a second-site suppressor mutation in the periplasmic disulfide bond catalyzing protein VKOR indicates the strong selective pressure for a functional cytochrome c oxidase. The observation that M. tuberculosis is able to partially compensate for defective CCM by upregulation of the cytochrome bd oxidase exposes a functional role of this alternative terminal oxidase under normal aerobic conditions and during pathogenesis. This suggests that targeting both oxidases simultaneously might be required to effectively disrupt respiration in M. tuberculosis.


Assuntos
Proteínas de Bactérias/metabolismo , Citocromos c/metabolismo , Mycobacterium tuberculosis/metabolismo , Tuberculose/microbiologia , Animais , Proteínas de Bactérias/genética , Citocromos c/genética , Transporte de Elétrons , Complexo IV da Cadeia de Transporte de Elétrons/genética , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Feminino , Heme/metabolismo , Humanos , Masculino , Camundongos Endogâmicos C57BL , Mycobacterium tuberculosis/enzimologia , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/crescimento & desenvolvimento , Oxigênio/metabolismo , Tiorredoxinas/genética , Tiorredoxinas/metabolismo
15.
PLoS One ; 8(6): e66626, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23840512

RESUMO

Since the first isolation of Rift Valley fever virus (RVFV) in the 1930s, there have been multiple epizootics and epidemics in animals and humans in sub-Saharan Africa. Prospective climate-based models have recently been developed that flag areas at risk of RVFV transmission in endemic regions based on key environmental indicators that precede Rift Valley fever (RVF) epizootics and epidemics. Although the timing and locations of human case data from the 2006-2007 RVF outbreak in Kenya have been compared to risk zones flagged by the model, seroprevalence of RVF antibodies in wildlife has not yet been analyzed in light of temporal and spatial predictions of RVF activity. Primarily wild ungulate serum samples from periods before, during, and after the 2006-2007 RVF epizootic were analyzed for the presence of RVFV IgM and/or IgG antibody. Results show an increase in RVF seropositivity from samples collected in 2007 (31.8%), compared to antibody prevalence observed from 2000-2006 (3.3%). After the epizootic, average RVF seropositivity diminished to 5% in samples collected from 2008-2009. Overlaying maps of modeled RVF risk assessments with sampling locations indicated positive RVF serology in several species of wild ungulate in or near areas flagged as being at risk for RVF. Our results establish the need to continue and expand sero-surveillance of wildlife species Kenya and elsewhere in the Horn of Africa to further calibrate and improve the RVF risk model, and better understand the dynamics of RVFV transmission.


Assuntos
Camelus/virologia , Surtos de Doenças , Febre do Vale de Rift/veterinária , Vírus da Febre do Vale do Rift/imunologia , Animais , Animais Selvagens/virologia , Anticorpos Antivirais/sangue , Artiodáctilos/virologia , Monitoramento Epidemiológico , Humanos , Quênia/epidemiologia , Prevalência , Febre do Vale de Rift/sangue , Febre do Vale de Rift/epidemiologia , Risco , Estudos Soroepidemiológicos
16.
Ecol Evol ; 3(6): 1529-38, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23789065

RESUMO

The phenotype-linked fertility hypothesis proposes that male fertility is advertised via phenotypic signals, explaining female preference for highly sexually ornamented males. An alternative view is that highly attractive males constrain their ejaculate allocation per mating so as to participate in a greater number of matings. Males are also expected to bias their ejaculate allocation to the most fecund females. We test these hypotheses in the African stalk-eyed fly, Diasemopsis meigenii. We ask how male ejaculate allocation strategy is influenced by male eyespan and female size. Despite large eyespan males having larger internal reproductive organs, we found no association between male eyespan and spermatophore size or sperm number, lending no support to the phenotype-linked fertility hypothesis. However, males mated for longer and transferred more sperm to large females. As female size was positively correlated with fecundity, this suggests that males gain a selective advantage by investing more in large females. Given these findings, we consider how female mate preference for large male eyespan can be adaptive despite the lack of obvious direct benefits.

17.
Environ Manage ; 52(1): 136-50, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23760733

RESUMO

We describe a model of forest flammability, based on daily satellite observations, for national to regional applications. The model defines forest flammability as the percent moisture content of fuel, in the form of litter of varying sizes on the forest floor. The model uses formulas from the US Forest Service that describe moisture exchange between fuel and the surrounding air and precipitation. The model is driven by estimates of temperature, humidity, and precipitation from the moderate resolution imaging spectrometer and tropical rainfall measuring mission multi-satellite precipitation analysis. We provide model results for the southern Amazon and northern Chaco regions. We evaluate the model in a tropical forest-to-woodland gradient in lowland Bolivia. Results from the model are significantly correlated with those from the same model driven by field climate measurements. This model can be run in a near real-time mode, can be applied to other regions, and can be a cost-effective input to national fire management programs.


Assuntos
Incêndios , Modelos Teóricos , Imagens de Satélites , Árvores , Bolívia , Umidade , Chuva , Temperatura , Clima Tropical
18.
J Biol Chem ; 288(18): 12489-99, 2013 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-23504313

RESUMO

The transmembrane serine protease MarP is important for pH homeostasis in Mycobacterium tuberculosis (Mtb). Previous structural studies revealed that MarP contains a chymotrypsin fold and a disulfide bond that stabilizes the protease active site in the substrate-bound conformation. Here, we determined that MarP is located in the Mtb periplasm and showed that this localization is essential for function. Using the recombinant protease domain of MarP, we identified its substrate specificity using two independent assays: positional-scanning synthetic combinatorial library profiling and multiplex substrate profiling by mass spectrometry. These methods revealed that MarP prefers bulky residues at P4, tryptophan or leucine at P2, arginine or hydrophobic residues at P1, and alanine or asparagine at P1'. Guided by these data, we designed fluorogenic peptide substrates and characterized the kinetic properties of MarP. Finally, we tested the impact of mutating MarP cysteine residues on the peptidolytic activity of recombinant MarP and its ability to complement phenotypes of Mtb ΔMarP. Taken together, our studies provide insight into the enzymatic properties of MarP, its substrate preference, and the importance of its transmembrane helices and disulfide bond.


Assuntos
Mycobacterium tuberculosis/enzimologia , Estresse Oxidativo/fisiologia , Peptídeo Hidrolases/metabolismo , Proteínas Periplásmicas/metabolismo , Dobramento de Proteína , Concentração de Íons de Hidrogênio , Mutação , Mycobacterium tuberculosis/genética , Peptídeo Hidrolases/genética , Proteínas Periplásmicas/genética , Estrutura Secundária de Proteína , Especificidade por Substrato/fisiologia
19.
J Bacteriol ; 195(4): 658-64, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23204470

RESUMO

Pseudomonas syringae injects numerous bacterial proteins into host plant cells through a type 3 secretion system (T3SS). One of the first such bacterial effectors discovered, HopA1, is a protein that has unknown functions in the host cell but possesses close homologs that trigger the plant hypersensitive response in resistant strains. Like the virulence factors in many bacterial pathogens of animals, HopA1 depends upon a cognate chaperone in order to be effectively translocated by the P. syringae T3SS. Herein, we report the crystal structure of a complex of HopA1(21-102) with its chaperone, ShcA, determined to 1.56-Å resolution. The structure reveals that three key features of the chaperone-effector interactions found in animal pathogens are preserved in the Gram-negative pathogens of plants, namely, (i) the interaction of the chaperone with a nonglobular polypeptide of the effector, (ii) an interaction centered on the so-called ß-motif, and (iii) the presence of a conserved hydrophobic patch in the chaperone that recognizes the ß-motif. Structure-based mutagenesis and biochemical studies have established that the ß-motif is critical for the stability of this complex. Overall, these results show that the ß-motif interactions are broadly conserved in bacterial pathogens utilizing T3SSs, spanning an interkingdom host range.


Assuntos
Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica/fisiologia , Chaperonas Moleculares/metabolismo , Pseudomonas syringae/metabolismo , Fatores de Virulência/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Animais , Proteínas de Bactérias/genética , Modelos Moleculares , Chaperonas Moleculares/genética , Mutação , Plantas/microbiologia , Ligação Proteica , Conformação Proteica , Pseudomonas syringae/genética , Pseudomonas syringae/patogenicidade , Fatores de Virulência/genética
20.
PLoS Negl Trop Dis ; 6(1): e1465, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22292093

RESUMO

BACKGROUND: Recent clusters of outbreaks of mosquito-borne diseases (Rift Valley fever and chikungunya) in Africa and parts of the Indian Ocean islands illustrate how interannual climate variability influences the changing risk patterns of disease outbreaks. Although Rift Valley fever outbreaks have been known to follow periods of above-normal rainfall, the timing of the outbreak events has largely been unknown. Similarly, there is inadequate knowledge on climate drivers of chikungunya outbreaks. We analyze a variety of climate and satellite-derived vegetation measurements to explain the coupling between patterns of climate variability and disease outbreaks of Rift Valley fever and chikungunya. METHODS AND FINDINGS: We derived a teleconnections map by correlating long-term monthly global precipitation data with the NINO3.4 sea surface temperature (SST) anomaly index. This map identifies regional hot-spots where rainfall variability may have an influence on the ecology of vector borne disease. Among the regions are Eastern and Southern Africa where outbreaks of chikungunya and Rift Valley fever occurred 2004-2009. Chikungunya and Rift Valley fever case locations were mapped to corresponding climate data anomalies to understand associations between specific anomaly patterns in ecological and climate variables and disease outbreak patterns through space and time. From these maps we explored associations among Rift Valley fever disease occurrence locations and cumulative rainfall and vegetation index anomalies. We illustrated the time lag between the driving climate conditions and the timing of the first case of Rift Valley fever. Results showed that reported outbreaks of Rift Valley fever occurred after ∼3-4 months of sustained above-normal rainfall and associated green-up in vegetation, conditions ideal for Rift Valley fever mosquito vectors. For chikungunya we explored associations among surface air temperature, precipitation anomalies, and chikungunya outbreak locations. We found that chikungunya outbreaks occurred under conditions of anomalously high temperatures and drought over Eastern Africa. However, in Southeast Asia, chikungunya outbreaks were negatively correlated (p<0.05) with drought conditions, but positively correlated with warmer-than-normal temperatures and rainfall. CONCLUSIONS/SIGNIFICANCE: Extremes in climate conditions forced by the El Niño/Southern Oscillation (ENSO) lead to severe droughts or floods, ideal ecological conditions for disease vectors to emerge, and may result in epizootics and epidemics of Rift Valley fever and chikungunya. However, the immune status of livestock (Rift Valley fever) and human (chikungunya) populations is a factor that is largely unknown but very likely plays a role in the spatial-temporal patterns of these disease outbreaks. As the frequency and severity of extremes in climate increase, the potential for globalization of vectors and disease is likely to accelerate. Understanding the underlying patterns of global and regional climate variability and their impacts on ecological drivers of vector-borne diseases is critical in long-range planning of appropriate disease and disease-vector response, control, and mitigation strategies.


Assuntos
Infecções por Alphavirus/epidemiologia , Infecções por Alphavirus/veterinária , Clima , Surtos de Doenças , Febre do Vale de Rift/epidemiologia , Febre do Vale de Rift/veterinária , África Oriental/epidemiologia , África Austral/epidemiologia , Animais , Febre de Chikungunya , Humanos , Telemetria
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